How Do You Treat a Livestock Well and Stock Tanks?
Last updated
Test the water first. If the test finds bacteria, give the animals another water source, check the pump and the equipment, treat the well by the extension method, and flush the water away from stock, plants and septic. Then clean the stock tanks and test again.
Step 1: Test the water first
Ohio State University Extension says to treat a well after a water test shows bacteria. Our advice: any coliform result means the well needs treatment and a second test.
Our guide on how to test well water shows how to find a certified lab in your state. A home bacteria test is a first screen. A certified lab confirms it.
Step 2: Give the animals another water source
Texas A&M AgriLife Extension says neither people nor animals should have prolonged contact with the water during treatment. If an automatic waterer serves the animals, it says to give them another water source for the treatment period.
Our advice: keep the animals on the other water source until the retest comes back clean.
Step 3: Check the pump and the equipment
Mississippi State University Extension says its method is only for wells with a working submersible pump. It says a jet pump or a damaged system needs a certified contractor.
Ohio State says chlorine can damage carbon filters and reverse osmosis units, so check the maker's rules. Mississippi State says to put water softeners and household filters in bypass mode. Texas A&M says chlorine can damage the rubber bladder in a pressure tank, so check the maker's guide to see if the tank should be bypassed.
Step 4: Treat the well by the extension method
The extension method is also called shock chlorination. Ohio State fact sheet AEX-318 and Texas A&M fact sheet SCSC-PU-106 give the steps and the amounts for the water standing in the well. In short:
- Find the water depth and the casing size. Ohio State uses them to size the amount from its table.
- Mix the chlorine product in water: about 3 gallons for Ohio State, a 5-gallon bucket for Texas A&M. Pour it into the well, and wash down the inside of the casing with a hose.
- Ohio State says to run each tap until you smell chlorine, then shut it off.
- Let it stand. Ohio State says 12 to 24 hours. Texas A&M says at least 12 hours, and 24 is better.
Ohio State says to wear safety glasses, gloves and an apron, because strong chlorine can hurt eyes and skin. It also says to never mix chlorine and ammonia, because they form a toxic gas. Read the full fact sheet before you start, or ask a well pro to do this step.
Home wells follow the same steps. See how to treat a well, step by step.
Step 5: Flush away from stock, plants and septic
Texas A&M says to run the outdoor faucets first, until the chlorine smell fades, and to let the water drain onto the ground. It says to keep the water off lawns, gardens and plants, and out of ponds, lakes, rivers and streams. It also says high loads of chlorine in a septic tank can kill the bacteria the tank needs. Mississippi State University Extension says to keep the flush water away from septic systems, landscaping and bodies of water.
Our advice: keep the animals away from the flush water too.
Step 6: Clean the stock tanks and troughs
The University of Georgia Equine Program says water troughs can breed bacteria. NC State Extension says to scrub the sides and bottom and rinse well. A tank with no drain is easier to empty if you turn off the water and let the stock drink it dry. NC State says a few minutes of tank care each week helps.
Our advice: clean the tanks after the flush, and refill them from the well after the retest comes back clean.
Step 7: Test again
Ohio State says to wait about two weeks, then test for bacteria again. Mississippi State says not to drink the water until it has been tested.
If bacteria are still there, Texas A&M says to treat again and test again. If they come back a third time, it says to look for the source: a poor wellhead, nearby livestock pens or a septic tank. Ohio State says a well that keeps failing may need a continuous disinfection system. Mississippi State says a well that fails may need cleaning first, and to contact a contractor or the local health department.
Questions about one kind of animal? See well water for chickens and well water for horses. More farm well help is on the farm wells page.
Talk to a local well pro
Simply fill out this form and be connected promptly.
Fill out the formStraight answers
Can I treat a livestock well myself?
Ohio State and Texas A&M extension fact sheets give the steps for well owners. Mississippi State University Extension says its method is only for wells with a working submersible pump, and that a jet pump or a damaged system needs a certified contractor. A local well pro can do the job for you.
How long do the animals stay off the treated water?
Texas A&M says to let the water stand at least 12 hours, and 24 is better, and to give the animals another water source for the treatment period. Our advice: keep the animals on the other water source until the retest comes back clean.
Where should the flush water go?
Texas A&M says to let it drain onto the ground, away from lawns, gardens and plants, and out of ponds, lakes, rivers and streams. Mississippi State says to keep it away from septic systems too.
When do I test the water again?
Ohio State University Extension says to wait about two weeks, then test for bacteria again.
How often should I clean a stock tank?
NC State Extension says to clean tanks periodically and to give them a few minutes of care each week. Scrub the sides and bottom and rinse well.
Sources
- Ohio State University Extension, Shock Chlorination of Wells (AEX-318), 2019.
- Texas A&M AgriLife Extension, Shock Chlorination of Wells (SCSC-PU-106), 2003.
- Mississippi State University Extension, Disinfecting a Water Well through Shock Chlorination (P3398), 2024.
- NC State Extension, Burke County Center, Controlling Algae in Livestock Water Tanks, 2025.
- University of Georgia Equine Program, When Horses and Extension Meet, 2026.
- Penn State Extension, Livestock Water Quality, 2024.
Keep reading
Not sure which fix you need? See every well water treatment, matched to its problem.
- How to treat a well
- Iron bacteria in well water
- Iron bacteria in toilet tank
- Rotten egg smell in water
- Coliform in well water
- Low water pressure from well
- Cloudy well water
- Rust stains from well water
- Black slime on faucets
- Metallic taste in well water
- Morning sulfur smell
- Hot water smells like rotten eggs
- Well water test kits
- Well service near me
- Well maintenance checklist
- Well inspection for home buyers
- Iron filters for well water
- Well treatment kits compared
- Sulfur water filters
- Well pump short cycling
- Well running dry
- How deep is my well
- Selling a house with a well
- E. coli in well water
- Well water treatment
- Well inspection and checklist
- Well flow test
- FHA, VA and USDA well rules
- Well pump repair
- Well pump pressure switch
- Water well drilling cost
- Well water for chickens
- Well water for horses
Well test reminders, by email
What is in well water this season, and when to test. One topic, one thing to do, with the sources linked.
More guides
See the libraryFarm animals
Is Well Water Safe for Chickens?
Test the well first. Then keep the flock away from it.
4 min read
Farm animals
Is Well Water Safe for Horses?
A yearly test, a fenced wellhead, and clean troughs.
4 min read
Smells and taste
Rotten Egg Smell in Well Water: Causes and the Fix
One quick test tells you if it is the well or the heater.
4 min read